Qcalc version history * Release 5.01 - Added feature to calculate solute entropies using Schlitter's formula and quasiharmonic analysis. - Added feature to calculate nonboded interactions between defined atoms from a dcd or restart file. - Added feature to calculate nonbonded interactions between a set of residues, the protein, and atoms in a second set, e.g. q-atoms, from a dcd or restart file. Nonbonded interactions are calculated and averaged for one residue at the time to all q-atoms. * Release 4.25, 00-11-25 Fixed problem with setting reference coordinates from a restart file. * Release 4.21, 00-08-25 Changed call to sign function to compile on SGI. * Beta version 4.18, 00-07-14 First 'public' version. This program replaces Qrms which could only calculate RMS coordinate deviations (with no superimposision) Qcalc is a trajectory analysis program (but it can read restart files). It is designed to be used interactively, but input can of course be redirected from a file. Qcalc works in three stages: 1. Load topology. 2. Set up a list of calculations to make. 3. Read coordinates from trajectory and/or restart files and calculate. The following calculation kinds are available 1 RMS coord. deviation 2 Least squares fit 3 Distance, bond energy 4 Angle, angle energy 5 Torsion, torsion energy Multiple calculation of each kind can be done. For RMDs and fitting, an atom mask is used to select atoms.